What is the best way to colonize a planet is the a script or some helper program i am using swath right now but can't find a way to do it easily.
And how do you get you alignment up quick in order to get in to an iss.

Alignment... you get 500k cash, post it as a bounty on a red player and then apply for a commission at the fed police. Instant 1k alignment. That's not the only way, but it's the most common way early in the game if you're a solo player.

Swath works fine. TWX also has several good ones. I just macro it, lets me do more creative things w/ the fuel to save a turn here and there.

Don't forget to check out http://www.navhaz.com/  most notably the TW-Cabal Archives
And because i'm lazy, I wrote a little diddy that spits out Col macros for me..  I'll post it in the Scripting forum.. requires TWX, tho. Which you should get your hands on.
 
 

i have swath i try and macro things and it someitmes stop after i have set the macro up. Is there a twx scirpt for colonizing without twarp.

Why dont you use the inherent skript from Swath? It does the job on auto.
just go strg+O in the skripts Menue.
Ciao

thanks i knew i saw a easy way somewhere just could not find it last night.

Ewarp colonizing is something you might want to avoid... it burns turns and is easy to kill.